Comments on: Grokking GATK: Common Pitfalls with the Genome Analysis Tool Kit (and Picard) https://samnicholls.net/2015/11/11/grokking-gatk/ The Exciting Adventures of Sam Mon, 18 Jan 2016 12:03:48 +0000 hourly 1 https://wordpress.org/?v=5.7.5 By: How (not) to subset a BAM for GATK | Samposium https://samnicholls.net/2015/11/11/grokking-gatk/#comment-16 Mon, 11 Jan 2016 22:09:05 +0000 https://samnicholls.net/?p=336#comment-16 […] guess this is for the same reason that GATK requires a .dict and .fai file for references as I’ve discussed before, it just makes things a little easier for developers (and their code). In this case, the assumption […]

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