Comments on: Duplicate definition error with GATK PrintReads and MalformedReadFilter https://samnicholls.net/2016/01/07/gatk-printreads-malformedreadfilter/ The Exciting Adventures of Sam Mon, 11 Jan 2016 22:46:39 +0000 hourly 1 https://wordpress.org/?v=5.7.5 By: How (not) to subset a BAM for GATK | Samposium https://samnicholls.net/2016/01/07/gatk-printreads-malformedreadfilter/#comment-15 Sun, 10 Jan 2016 22:32:50 +0000 https://samnicholls.net/?p=468#comment-15 […] to check whether these reads would fall foul of the infamous MalformedReadFilter with PrintReads (don’t forget, PrintReads automatically applies MalformedReadFilter) a completely different error […]

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