Grokking GATK: Common Pitfalls with the Genome Analysis Tool Kit (and Picard)
Recently I’ve been following the GATK DNASeq Best Practice Pipeline for my limpet sequence data. Here are some of the mistakes I made and how I made them go away.
Status Report: October 2015
I’m still alive, here’s some things what I’ve done.
Sanger Sequel
In a change to scheduled programming, days after touching down from my holiday (which needs a post of its own) I moved1 to spend the next few weeks back at the Wellcome Trust Sanger Institute in Cambridgeshire. I interned here previously in 2012 and it’s still like working at a science-orientated Google thanks to the […]